APPLICATION OF THE TARGETED MULTIGENE SEQUENCING FOR THE SEARCH OF HEREDITARY BREAST CANCER MUTATIONS IN RUSSIAN PATIENTS
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Keywords

HEREDITARY BREAST CANCER
TARGETED MULTIGENE SEQUENCING

How to Cite

Zagorodnev, K., Suspitsyn, Y., Sokolenko, A., Romanko, A., Anisimova, M., Bizin, I., Kuligina, Y., & Imyanitov, Y. (2019). APPLICATION OF THE TARGETED MULTIGENE SEQUENCING FOR THE SEARCH OF HEREDITARY BREAST CANCER MUTATIONS IN RUSSIAN PATIENTS. Voprosy Onkologii, 65(3), 349–356. https://doi.org/10.37469/0507-3758-2019-65-3-349-356

Abstract

Understanding of the molecular-genetic pathogenesis of hereditary cancer syndrome is extremely important for developing of personal therapeutic approaches and for improving the effectiveness of preventive measures. Today, the optimal solution for the search of causative germ-line mutations in hereditary breast cancer (BC) patients is the next-generation sequencing-based multigene mutational screening. The authors have assembled a targeted panel of 31 genes, based on their potential involvement in the cancer susceptibility and taking into account the frequency of pathogenic alleles in the Russian population. It includes the “canonical” genes of hereditary breast cancer (BRCA1, BRCA2, BRIP1, PALB2, TP53, ATM, NBN), the recently identified “novel” genes (BLM, FANCD2, POLE, FANCM, RAD51C, MRE11A, RECQL, as well as some other genes involved in DNA repair, apoptosis and genome stability maintenance. 94 patients with hereditary BC of unknown genetic etiology were subjected to targeted sequencing. As a result, causative germ-line mutations were identified in 21/94 (22.3%) patients. Importantly, 19 patients harbored rare non-founder BRCA1 and BRCA2 mutations. In the remaining two cases, the functions of the ATM (p.Glu73fs) and POLE (p.Leu1171fs) genes were disrupted. The obtained data are of evident clinical importance; they argue for the expanding of diagnostic panels for monitoring at-risk individuals and for moving the standards of routine clinical diagnostics towards the targeted next-generation sequencing of multigene panels.

https://doi.org/10.37469/0507-3758-2019-65-3-349-356
PDF (Русский)

References

Afghahi A., Kurian W. A. The changing landscape of genetic testing for inherited breast cancer predisposition // Curr. Treat. Options in Oncol. - 2017. - Vol. 18. - P. 27.

Balanovsky O., Rootsi S., Pshenichnov A. et al. Two sources of the Russian patrilineal heritage in their Eurasian context // Am. J. Hum. Genet. - 2008. - Vol. 82. - P. 236-250.

Chong H.K., Wang T., Lu H-M. et al. The Validation and Clinical Implementation of BRCAplus: A Comprehensive High-Risk Breast Cancer Diagnostic Assay // PLoS ONE. - 2014. - Vol. 9(5). - P. e97408.

Crawford B., Adams S.B., Sittler T. et al. Multi-gene panel testing for hereditary cancer predisposition in unsolved high-risk breast and ovarian cancer patients // Breast Cancer Res Treat. - 2017. - Vol. 163(2). - P. 383-390.

Cybulski C., Carrot-Zhang J., Kluzniak W. et al. Germline RECQL mutations are associated with breast cancer susceptibility // Nat. Genet. - 2015. - Vol. 47. - P 643-646.

Curci A., Capasso I., Romano A. et al. Characterization of 2 novel and 2 recurring BRCA1 germline mutations in breast and/or ovarian carcinoma patients from the area of Naples // Int. J. Oncol. - 2002. - Vol. 20. - № 5. - P. 963-970.

Desmond A., Kurian A.W., Gabree M. et al. Clinical Actionability of Multigene Panel Testing for Hereditary Breast and Ovarian Cancer Risk Assessment // JAMA Oncol. - 2015. - Vol. 1(7). - P 943-951.

Gayther S.A., Harrington P, Russell P et al. Frequently occurring germ-line mutations of the BRCA1 gene in ovarian cancer families from Russia // Am J. Hum Genet. - 1997. - Vol. 60. - № 5. - P. 1239-1242.

Graffeo R., Livraghi L., Pagani O. et al. Time to incorporate germline multigene panel testing into breast and ovarian cancer patient care // Breast Cancer Res Treat. - 2016. - Vol. 160. - P. 393-410.

Hall M.J., Obeid E., Daly M.B. Multigene panels to evaluate hereditary cancer risk: reckless or relevant? // J. Clin. Oncol. - 2016. - Vol. 34. - P. 4186-4187.

Hauke J., Horvath J., GrolS E. et al. Gene panel testing of 5589 BRCA1/2-negative index patients with breast cancer in a routine diagnostic setting: results of the German Consortium for Hereditary Breast and Ovarian Cancer // Cancer Med. - 2018. - Vol. 7(4). - P. 1349-1358.

Hoyer J., Vasileiou G., Uebe S. et al. Addition of triple negativity of breast cancer as an indicator for germline mutations in predisposing genes increases sensitivity of clinical selection criteria // BMC Cancer. - 2018. - Vol. 18(1). - P. 926.

Iyevleva A.G., Suspitsin E.N., Kroeze K. et al. Non-founder BRCA1 mutations in Russian breast cancer patients // Cancer Lett. - 2010. - Vol. 298. - P. 258-263.

Kast K., Rhiem K., Wappenschmidt B. et al. Prevalence of BRCA1/2 germline mutations in 21 401 families with breast and ovarian cancer // J. Med. Genet. - 2016. -Vol. 53. - P. 465-471.

Kiiski J.I., Pelttari L.M., Khan S. et al. Exome sequencing identifies FANCM as a susceptibility gene for triple-negative breast cancer // Proc. Natl. Acad. Sci. USA. - 2014. - Vol. 111. - P. 15172-15177.

Kircher M., Witten D.M., Jain P. et al. A general framework for estimating the relative pathogenicity of human genetic variants // Nat Genet. - 2014. - Vol. 46(3). - P. 310-315.

Kuchenbaecker K.B., Hopper J.L., Barnes D.R. et al. Risks of Breast, Ovarian, and Contralateral Breast Cancer for BRCA1 and BRCA2 Mutation Carriers // JAMA. - 2017. - Vol. 317(23). - P. 2402-2416.

LaDuca H., Stuenkel A.J., Dolinsky J.S. et al. Utilization of multigene panels in hereditary cancer predisposition testing: analysis of more than 2, 000 patients // Genet. Med. - 2014. - Vol. 16. - P. 830-837.

Lu H.M., Li S., Black M.H., Lee S. et al. Association of Breast and Ovarian Cancers With Predisposition Genes Identified by Large-Scale Sequencing // JAMA Oncol. -2018. - DOI: 10.1001/jamaoncol.2018.2956

Mainiero M.B., Lourenco A., Mahoney M.C. et al. ACR appropriateness criteria breast cancer screening // J. Am. Coll. Radiol. - 2013. - Vol. 10. - P. 11-14.

Michailidou K., Lindstrom S., Dennis J. et al. Association analysis identifies 65 new breast cancer risk loci // Nature. - 2017. - Vol. 551. - № 7678. - P. 92-94.

NCCN Guidelines Version 2.2019.

Nelson H.D., Pappas M., Zakher B. et al. Risk assessment, genetic counseling, and genetic testing for BRCA-related cancer in women: a systematic review to update the U.S. Preventive Services Task Force recommendation // Ann Intern. Med. - 2014. - Vol. 160. - P. 255-266.

Njiaju U.O., Olopade O.I. Genetic determinants of breast cancer risk: a review of current literature and issues pertaining to clinical application // Breast J. - 2012. - Vol.18. - P. 436-442.

Palacios J., Robles-Frias M.J., Castilla M.A. et al. The molecular pathology of hereditary breast cancer // Patho-biology. - 2008. - Vol. 75(2). - P. 85-94.

Park J.S., Lee S.T., Nam E.J. et al. Variants of cancer susceptibility genes in Korean BRCA1/2 mutation-negative patients with high risk for hereditary breast cancer // BMC Cancer. - 2018. - Vol. 18(1). - P. 83.

Rosenthal E.T., Bernhisel R., Brown K. et al. Clinical testing with a panel of 25 genes associated with increased cancer risk results in a significant increase in clinically significant findings across a broad range of cancer histories // Cancer Genet. - 2017. - Vol. 218-219. - P. 58-68.

Richards S., Aziz N., Bale S. et al. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology // Genet. Med. - 2015. - Vol. 17. -P. 405-423.

Sokolenko A., Imyanitov E. Multigene testing for breast cancer risk assessment: an illusion of added clinical value // Chin. Clin. Oncol. - 2017. - Vol. 6(2). - P. 15.

Sokolenko A.P., Iyevleva A.G., Preobrazhenskaya E.V. et al. High prevalence and breast cancer predisposing role of the BLM c.1642 C>T (Q548X) mutation in Russia // Int. J. Cancer. - 2012. - Vol. 130. - P. 2867-2873.

Sokolenko A.P., Rozanov M.E., Mitiushkina N.V. et al. Founder mutations in early-onset, familial and bilateral breast cancer patients from Russia // Fam Cancer. -2007. - Vol. 6. - P. 281-286.

Stadler Z.K., Schrader K.A., Vijai J. et al. Cancer genomics and inherited risk // J. Clin. Oncol. - 2014. - Vol. 32(7). - P. 687-698.

Thompson E.R., Doyle M.A., Ryland G.L. et al. Exome sequencing identifies rare deleterious mutations in DNA repair genes FANCC and BLM as potential breast cancer susceptibility alleles // PLoS Genet. - 2012. - Vol. 8. - P. e1002894.

Tung N., Battelli C., Allen B. et al. Frequency of mutations in individuals with breast Cancer referred for BRCA1 and BRCA2 testing using next-generation sequencing with a 25-gene panel // Cancer. - 2015. - Vol. 121(1). - P. 25-33.

Tung N., Domchek S.M., Stadler Z. et al. Counselling framework for moderate-penetrance cancer-susceptibility mutations // Nat. Rev. Clin. Oncol. - 2016. - Vol. 13(9). - P. 581-588.

van den Akker J., Mishne G. et al. A machine learning model to determine the accuracy of variant calls in capture-based next generation sequencing // BMC Genomics. - 2018. - Vol. 19(1). - P. 263.

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